PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5BS_86C1C9A9F.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family FAR1
Protein Properties Length: 508aa    MW: 58210.6 Da    PI: 6.9757
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5BS_86C1C9A9F.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR140.49.5e-13152223182
                   FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkle 82 
                            +fYn Y+ e+GF +r +ks+++  +g+  +++fvC ++gk++e +++         ++r++C+a++++ +++d+ w+++k  
  Traes_5BS_86C1C9A9F.2 152 DFYNLYSWETGFGIRYAKSRTN-VKGTRCMQEFVCCCSGKPKEANST---------SSRCQCQAMIRLLRTEDNGWHIDKYT 223
                            6*****************9998.66668899**********997666.........9*********************9876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.4E-9152223IPR004330FAR1 DNA binding domain
PfamPF105513.7E-30326419IPR018289MULE transposase domain
Sequence ? help Back to Top
Protein Sequence    Length: 508 aa     Download sequence    Send to blast
MASAEAGESS MAAFVAERNE SVSSWGISNY PDSAVFGIDS ERLSVLREVV EDDPSGGFAD  60
LLDSVDVRTE TNTTDLEENR ASRMDNRYAS LDDKVGWVTR NRRVAVPDER ATSADRVTAL  120
ETALTGFAER KTDTVVTPSV GLTFDSINEA YDFYNLYSWE TGFGIRYAKS RTNVKGTRCM  180
QEFVCCCSGK PKEANSTSSR CQCQAMIRLL RTEDNGWHID KYTRELVSQL RENNVNLSKV  240
YNILATFFGR VENVPFTKRC LRTLCGKLSR EQADDDVRKT MAIFSEMKVQ DSDFTYNVQV  300
DEESRIRTLM WTNGRSKKQY HHFGDVVTFD TTYKTNLYDM PFGIFVGVNN HFQSVLYAGV  360
LMRDETVDTF KWIFDEFVKM MGGKRPITIL TDQARAMEVA IADVYPDATH RWCKWHILKK  420
AKESLGSNYT KKSDFRAEFH KLVHEMLTIE EFEDGWAALL EKYSLKNNTY LMQIYKTRQK  480
WAKPYFAGKF CARQTSTGRS ESANHMLK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014753620.11e-141PREDICTED: putative protein FAR1-RELATED SEQUENCE 10
TrEMBLW5FMW10.0W5FMW1_WHEAT; Uncharacterized protein
STRINGBRADI1G43906.11e-178(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.14e-59FAR1-related sequence 5
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]